Welcome to ldgm’s documentation

ldgm is a software package that enables extremely sparse and highly accurate modeling of linkage disequilibrium (LD).

Contents:

• Introduction
• Installation
• Tutorial
  • Fast Matrix Algebra with LDGM Precision Matrices
• Python API
  • Creating an LDGM
  • Intermediate steps to creating an LDGM
  • Utility functions
• MATLAB API
  • Functions to analyze GWAS summary statistics using LDGM precision matrices
  • Functions to infer LDGM precision matrices

Indices and tables

• Index

• Search Page